fst::M2MFstAligner Class Reference

#include <M2MFstAligner.h>

Public Member Functions
	M2MFstAligner ()
	M2MFstAligner (bool seq1_del, bool seq2_del, unsigned int seq1_max, unsigned int seq2_max, string seq1_sep, string seq2_sep, string s1s2_sep, string eps, string _skip, bool _penalize, bool penalize_em, bool restrict)
	M2MFstAligner (string model_file, bool penalize, bool penalize_em, bool restrict)
void	write_model (string model_name)
void	Sequences2FST (VectorFst< LogArc > *fst, vector< string > *seq1, vector< string > *seq2)
void	Sequences2FSTNoInit (VectorFst< LogArc > *fst, vector< string > *seq1, vector< string > *seq2)
void	entry2alignfst (vector< string > seq1, vector< string > seq2)
void	entry2alignfstnoinit (vector< string > seq1, vector< string > seq2, int nbest, string lattice="")
void	_conditional_max (bool x_given_y)
void	expectation ()
float	maximization (bool lastiter)
void	_compute_penalties (LogArc::Label label, int lhs, int rhs, bool lhsE, bool rhsE)

Public Attributes
bool	seq1_del
bool	seq2_del
unsigned int	seq1_max
unsigned int	seq2_max
string	seq1_sep
string	seq2_sep
string	s1s2_sep
string	eps
string	skip
bool	penalize
bool	penalize_em
bool	restrict
set< int >	skipSeqs
vector< VectorFst< LogArc > >	fsas
SymbolTable *	isyms
map< LogArc::Label, LogWeight >	alignment_model
map< LogArc::Label, LogWeight >	prev_alignment_model
LabelData	penalties
LogWeight	total
LogWeight	prevTotal

Detailed Description

Definition at line 40 of file M2MFstAligner.h.

Constructor & Destructor Documentation

M2MFstAligner::M2MFstAligner

(

)

Definition at line 35 of file M2MFstAligner.cc.

M2MFstAligner::M2MFstAligner	(	bool	seq1_del,
		bool	seq2_del,
		unsigned int	seq1_max,
		unsigned int	seq2_max,
		string	seq1_sep,
		string	seq2_sep,
		string	s1s2_sep,
		string	eps,
		string	_skip,
		bool	_penalize,
		bool	penalize_em,
		bool	restrict
	)

Definition at line 39 of file M2MFstAligner.cc.

M2MFstAligner::M2MFstAligner	(	string	model_file,
		bool	penalize,
		bool	penalize_em,
		bool	restrict
	)

Definition at line 74 of file M2MFstAligner.cc.

Member Function Documentation

void M2MFstAligner::_compute_penalties	(	LogArc::Label	label,
		int	lhs,
		int	rhs,
		bool	lhsE,
		bool	rhsE
	)

Definition at line 550 of file M2MFstAligner.cc.

void M2MFstAligner::_conditional_max

(

bool

x_given_y

)

Definition at line 173 of file M2MFstAligner.cc.

void M2MFstAligner::entry2alignfst	(	vector< string >	seq1,
		vector< string >	seq2
	)

Definition at line 532 of file M2MFstAligner.cc.

void M2MFstAligner::entry2alignfstnoinit	(	vector< string >	seq1,
		vector< string >	seq2,
		int	nbest,
		string	lattice = ""
	)

Definition at line 539 of file M2MFstAligner.cc.

void M2MFstAligner::expectation

(

)

Definition at line 134 of file M2MFstAligner.cc.

float M2MFstAligner::maximization

(

bool

lastiter

)

Definition at line 268 of file M2MFstAligner.cc.

void M2MFstAligner::Sequences2FST	(	VectorFst< LogArc > *	fst,
		vector< string > *	seq1,
		vector< string > *	seq2
	)

Definition at line 325 of file M2MFstAligner.cc.

void M2MFstAligner::Sequences2FSTNoInit	(	VectorFst< LogArc > *	fst,
		vector< string > *	seq1,
		vector< string > *	seq2
	)

Definition at line 460 of file M2MFstAligner.cc.

void M2MFstAligner::write_model

(

string

model_name

)

Definition at line 115 of file M2MFstAligner.cc.

Member Data Documentation

map<LogArc::Label, LogWeight> fst::M2MFstAligner::alignment_model

Definition at line 86 of file M2MFstAligner.h.

string fst::M2MFstAligner::eps

Definition at line 69 of file M2MFstAligner.h.

vector<VectorFst<LogArc> > fst::M2MFstAligner::fsas

Definition at line 79 of file M2MFstAligner.h.

SymbolTable* fst::M2MFstAligner::isyms

Definition at line 85 of file M2MFstAligner.h.

bool fst::M2MFstAligner::penalize

Definition at line 71 of file M2MFstAligner.h.

bool fst::M2MFstAligner::penalize_em

Definition at line 72 of file M2MFstAligner.h.

LabelData fst::M2MFstAligner::penalties

Definition at line 88 of file M2MFstAligner.h.

map<LogArc::Label, LogWeight> fst::M2MFstAligner::prev_alignment_model

Definition at line 87 of file M2MFstAligner.h.

LogWeight fst::M2MFstAligner::prevTotal

Definition at line 90 of file M2MFstAligner.h.

bool fst::M2MFstAligner::restrict

Definition at line 73 of file M2MFstAligner.h.

string fst::M2MFstAligner::s1s2_sep

Definition at line 68 of file M2MFstAligner.h.

bool fst::M2MFstAligner::seq1_del

Definition at line 62 of file M2MFstAligner.h.

unsigned int fst::M2MFstAligner::seq1_max

Definition at line 64 of file M2MFstAligner.h.

string fst::M2MFstAligner::seq1_sep

Definition at line 66 of file M2MFstAligner.h.

bool fst::M2MFstAligner::seq2_del

Definition at line 63 of file M2MFstAligner.h.

unsigned int fst::M2MFstAligner::seq2_max

Definition at line 65 of file M2MFstAligner.h.

string fst::M2MFstAligner::seq2_sep

Definition at line 67 of file M2MFstAligner.h.

string fst::M2MFstAligner::skip

Definition at line 70 of file M2MFstAligner.h.

set<int> fst::M2MFstAligner::skipSeqs

Definition at line 76 of file M2MFstAligner.h.

LogWeight fst::M2MFstAligner::total

Definition at line 89 of file M2MFstAligner.h.

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The documentation for this class was generated from the following files:

• src/include/M2MFstAligner.h
• src/lib/M2MFstAligner.cc